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st6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116724411, updated on 18-Mar-2024

Summary

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Gene symbol
st6galnac6
Gene description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See st6galnac6 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 8 NC_045679.1 (20808649..20816264)

Chromosome 8 - NC_045679.1Genomic Context describing neighboring genes Neighboring gene mitoguardin 2 Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene SPOUT domain containing methyltransferase 1 Neighboring gene kynurenine aminotransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045679.1 Chromosome 8 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Names
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045679.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    20808649..20816264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032570092.1 → XP_032425983.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform X3

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 297
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_032570091.1 → XP_032425982.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform X2

    Conserved Domains (1) summary
    pfam00777
    Location:107 → 333
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_032570090.1 → XP_032425981.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:107 → 334
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein Strain
Heading Accession and Version

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