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st3gal3b ST3 beta-galactoside alpha-2,3-sialyltransferase 3b [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116721495, updated on 18-Mar-2024

Summary

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Gene symbol
st3gal3b
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
st3gal3
Orthologs
zebrafish all
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Genomic context

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See st3gal3b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 6 NC_045677.1 (2777316..2853739)

Chromosome 6 - NC_045677.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 8a Neighboring gene lysine (K)-specific demethylase 4A, genome duplicate b Neighboring gene uncharacterized LOC116721497 Neighboring gene uncharacterized LOC116722331 Neighboring gene prostaglandin E receptor 4 (subtype EP4) c

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045677.1 Chromosome 6 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
Names
ST3 beta-galactoside alpha-2,3-sialyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045677.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    2777316..2853739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032565264.1 → XP_032421155.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:123 → 428
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_032565265.1 → XP_032421156.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X2

    Conserved Domains (1) summary
    pfam00777
    Location:102 → 407
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_032565266.1 → XP_032421157.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X3

    Conserved Domains (1) summary
    pfam00777
    Location:88 → 393
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_032565263.1 → XP_032421154.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:123 → 428
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_032565267.1 → XP_032421158.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X4

    Conserved Domains (1) summary
    pfam00777
    Location:123 → 388
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_032565268.1 → XP_032421159.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X5

    Conserved Domains (1) summary
    pfam00777
    Location:102 → 367
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_032565269.1 → XP_032421160.1  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X6

    Conserved Domains (1) summary
    pfam00777
    Location:88 → 353
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein Strain
Heading Accession and Version

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