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LOC116721209 fibrous sheath CABYR-binding protein-like [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116721209, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116721209
Gene description
fibrous sheath CABYR-binding protein-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC116721209 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 6 NC_045677.1 (603133..638625, complement)

Chromosome 6 - NC_045677.1Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene phospholipid phosphatase-related protein type 4-like Neighboring gene UPF0329 protein ECU05_1680/ECU11_0050-like Neighboring gene uncharacterized LOC116721271 Neighboring gene uncharacterized LOC116721306

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045677.1 Chromosome 6 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like; fibrous sheath CABYR-binding protein-like; serine-aspartate repeat-containing protein I-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045677.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    603133..638625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032564793.1 → XP_032420684.1  serine-aspartate repeat-containing protein I-like isoform X6

    Conserved Domains (1) summary
    pfam05279
    Location:39 → 159
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_032564795.1 → XP_032420686.1  serine-aspartate repeat-containing protein I-like isoform X7

    Conserved Domains (1) summary
    pfam05279
    Location:30 → 150
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_032564799.1 → XP_032420690.1  fibrous sheath CABYR-binding protein-like isoform X11

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 81
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_032564791.1 → XP_032420682.1  serine-aspartate repeat-containing protein I-like isoform X4

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 209
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_032564796.1 → XP_032420687.1  serine-aspartate repeat-containing protein I-like isoform X8

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 170
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  6. XM_032564792.1 → XP_032420683.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 170
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  7. XM_032564790.1 → XP_032420681.1  serine-aspartate repeat-containing protein I-like isoform X3

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 170
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  8. XM_032564789.1 → XP_032420680.1  serine-aspartate repeat-containing protein I-like isoform X2

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 170
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  9. XM_032564788.1 → XP_032420679.1  serine-aspartate repeat-containing protein I-like isoform X1

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 170
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  10. XM_032564798.1 → XP_032420689.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X10

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 133
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  11. XM_032564797.1 → XP_032420688.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X9

    Conserved Domains (1) summary
    pfam05279
    Location:50 → 148
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein Strain
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