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LOC116720185 xylosyltransferase 1-like [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116720185, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116720185
Gene description
xylosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC116720185 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 5 NC_045676.1 (20966983..21075642, complement)

Chromosome 5 - NC_045676.1Genomic Context describing neighboring genes Neighboring gene notum pectinacetylesterase 2 Neighboring gene ribosomal protein S15a Neighboring gene nodal modulator Neighboring gene transmembrane channel like 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045676.1 Chromosome 5 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045676.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    20966983..21075642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032563311.1 → XP_032419202.1  xylosyltransferase 1-like

    Conserved Domains (2) summary
    pfam12529
    Location:602 → 784
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:317 → 569
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein Strain
Heading Accession and Version

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