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alg13 ALG13 UDP-N-acetylglucosaminyltransferase subunit [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116720096, updated on 18-Mar-2024

Summary

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Gene symbol
alg13
Gene description
ALG13 UDP-N-acetylglucosaminyltransferase subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See alg13 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 5 NC_045676.1 (157969..165218, complement)

Chromosome 5 - NC_045676.1Genomic Context describing neighboring genes Neighboring gene wiskott-Aldrich syndrome protein family member 2-like Neighboring gene uncharacterized LOC116720130 Neighboring gene alanyl-tRNA synthetase 2, mitochondrial (putative) Neighboring gene uncharacterized LOC116720139 Neighboring gene uncharacterized LOC116720690 Neighboring gene calpain-2 catalytic subunit-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045676.1 Chromosome 5 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045676.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    157969..165218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032563161.1 → XP_032419052.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

    Conserved Domains (4) summary
    PRK07764
    Location:512 → 645
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK10263
    Location:344 → 594
    PRK10263; DNA translocase FtsK; Provisional
    cl02573
    Location:295 → 367
    Tudor_SF; Tudor domain superfamily
    cl19932
    Location:29 → 133
    OTU; OTU-like cysteine protease
Nucleotide Protein Strain
Heading Accession and Version

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