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rbpms2 RNA binding protein, mRNA processing factor 2 [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116718457, updated on 14-Dec-2023

Summary

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Gene symbol
rbpms2
Gene description
RNA binding protein, mRNA processing factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See rbpms2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 4 NC_045675.1 (26796596..26808997, complement)

Chromosome 4 - NC_045675.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S17-like Neighboring gene cytoplasmic polyadenylation element binding protein 1 Neighboring gene proteasome 20S subunit alpha 4 Neighboring gene ubiquitin like 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045675.1 Chromosome 4 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of smooth muscle cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein with multiple splicing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045675.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    26796596..26808997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032560423.1 → XP_032416314.1  RNA-binding protein with multiple splicing 2 isoform X1

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  2. XM_032560430.1 → XP_032416321.1  RNA-binding protein with multiple splicing 2 isoform X5

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  3. XM_032560425.1 → XP_032416316.1  RNA-binding protein with multiple splicing 2 isoform X3

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  4. XM_032560424.1 → XP_032416315.1  RNA-binding protein with multiple splicing 2 isoform X2

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  5. XM_032560432.1 → XP_032416323.1  RNA-binding protein with multiple splicing 2 isoform X6

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  6. XM_032560433.1 → XP_032416324.1  RNA-binding protein with multiple splicing 2 isoform X6

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  7. XM_032560428.1 → XP_032416319.1  RNA-binding protein with multiple splicing 2 isoform X4

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  8. XM_032560434.1 → XP_032416325.1  RNA-binding protein with multiple splicing 2 isoform X7

    Conserved Domains (1) summary
    cl17169
    Location:13 → 32
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_032560426.1 → XP_032416317.1  RNA-binding protein with multiple splicing 2 isoform X3

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  10. XM_032560429.1 → XP_032416320.1  RNA-binding protein with multiple splicing 2 isoform X4

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

  11. XM_032560427.1 → XP_032416318.1  RNA-binding protein with multiple splicing 2 isoform X3

    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif (RRM) found in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)
Nucleotide Protein Strain
Heading Accession and Version

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