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ano5b anoctamin 5b [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116718084, updated on 18-Mar-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 4 NC_045675.1 (19659099..19683188)

Chromosome 4 - NC_045675.1Genomic Context describing neighboring genes Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene solute carrier family 17 member 6b Neighboring gene growth arrest-specific 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045675.1 Chromosome 4 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045675.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    19659099..19683188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032559739.1 → XP_032415630.1  anoctamin-5-like isoform X1

    Conserved Domains (2) summary
    pfam04547
    Location:293 → 873
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 290
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_032559740.1 → XP_032415631.1  anoctamin-5-like isoform X2

    Conserved Domains (2) summary
    pfam04547
    Location:278 → 858
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:59 → 275
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein Strain
Heading Accession and Version

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