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LOC116714596 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116714596, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116714596
Gene description
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC116714596 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 23 NC_045694.1 (44768..821566)

Chromosome 23 - NC_045694.1Genomic Context describing neighboring genes Neighboring gene transcription factor COE3-like Neighboring gene uncharacterized LOC116714626 Neighboring gene uncharacterized LOC116714618 Neighboring gene uncharacterized LOC116714628 Neighboring gene uncharacterized LOC116714623 Neighboring gene uncharacterized LOC116714619 Neighboring gene uncharacterized LOC116714622 Neighboring gene matrin 3-like 1.1 Neighboring gene matrin 3-like 1.2 Neighboring gene cilia- and flagella-associated protein 251-like Neighboring gene neurogenin 1 Neighboring gene poly(A) binding protein interacting protein 2 Neighboring gene uncharacterized LOC116714620 Neighboring gene uncharacterized LOC116714627 Neighboring gene solute carrier family 44 member 1b Neighboring gene TBC1 domain family, member 2 Neighboring gene ATP-binding cassette, sub-family A (ABC1), member 1B Neighboring gene nipsnap homolog 3A (C. elegans) Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 Neighboring gene nitric oxide associated 1 Neighboring gene StAR-related lipid transfer (START) domain containing 15 Neighboring gene cytochrome c oxidase assembly protein COX18, mitochondrial Neighboring gene proteinase-activated receptor 4-like Neighboring gene DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like Neighboring gene uncharacterized LOC116714621 Neighboring gene uncharacterized LOC116714630 Neighboring gene transforming growth factor, beta-induced Neighboring gene exosome component 3 Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene selenoprotein T, 2 Neighboring gene insulin-like growth factor binding protein 7 Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene RE1-silencing transcription factor Neighboring gene TBC1 domain family member 9B Neighboring gene sequestosome 1 Neighboring gene probable pancreatic secretory proteinase inhibitor Neighboring gene ubiquitin-conjugating enzyme E2 2-like Neighboring gene ring finger protein 4 Neighboring gene MRN complex interacting protein Neighboring gene ring finger protein 130 Neighboring gene transmembrane protein 150B Neighboring gene uncharacterized LOC116714629 Neighboring gene uncharacterized LOC116714624 Neighboring gene RNA polymerase II subunit B Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene diacylglycerol kinase theta Neighboring gene mastermind-like transcriptional coactivator 1 Neighboring gene calnexin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045694.1 Chromosome 23 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045694.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    44768..821566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032555272.1 → XP_032411163.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B isoform X2

    Conserved Domains (1) summary
    pfam04666
    Location:83 → 360
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

  2. XM_032555271.1 → XP_032411162.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B isoform X1

    Conserved Domains (1) summary
    pfam04666
    Location:109 → 386
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

RNA

  1. XR_004338082.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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