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chpf2 chondroitin polymerizing factor 2 [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116711675, updated on 18-Mar-2024

Summary

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Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See chpf2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 21 NC_045692.1 (18031090..18036316, complement)

Chromosome 21 - NC_045692.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3b Neighboring gene uncharacterized LOC116711628 Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045692.1 Chromosome 21 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045692.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    18031090..18036316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032551101.1 → XP_032406992.1  chondroitin sulfate glucuronyltransferase

    Conserved Domains (2) summary
    pfam05679
    Location:245 → 750
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:132 → 271
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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