U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hcfc1a host cell factor C1a [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116710053, updated on 18-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
hcfc1a
Gene description
host cell factor C1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
hcfc1
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hcfc1a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 20 NC_045691.1 (25217860..25235293)

Chromosome 20 - NC_045691.1Genomic Context describing neighboring genes Neighboring gene blue-sensitive opsin Neighboring gene blue-sensitive opsin-like Neighboring gene uncharacterized LOC116710055 Neighboring gene GATA binding protein 1a Neighboring gene bcl-2-like protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_045691.1 Chromosome 20 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
host cell factor 1
Names
host cell factor C1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045691.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    25217860..25235293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032548848.1 → XP_032404739.1  host cell factor 1

    Conserved Domains (5) summary
    PLN02193
    Location:5 → 323
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1533 → 1562
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    cl21522
    Location:1569 → 1671
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.