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mtm1 myotubularin 1 [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116707182, updated on 12-Sep-2024

Summary

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Gene symbol
mtm1
Gene description
myotubularin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
zebrafish all
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Genomic context

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See mtm1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
18
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 19 NC_045751.1 (16455278..16490672)

Chromosome 19 - NC_045751.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116707223 Neighboring gene uncharacterized LOC116707243 Neighboring gene N-acetyltransferase 16 Neighboring gene uncharacterized LOC116707236 Neighboring gene myotubularin related protein 1a Neighboring gene CD99 molecule-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045751.1 Chromosome 19 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrion distribution IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle cell cellular homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045751.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    16455278..16490672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032544441.1 → XP_032400332.1  myotubularin isoform X1

    Conserved Domains (2) summary
    pfam06602
    Location:159 → 478
    Myotub-related; Myotubularin-like phosphatase domain
    cl17171
    Location:42 → 141
    PH-like; Pleckstrin homology-like domain

  2. XM_032544442.1 → XP_032400333.1  myotubularin isoform X2

    Conserved Domains (2) summary
    pfam06602
    Location:159 → 478
    Myotub-related; Myotubularin-like phosphatase domain
    cl17171
    Location:42 → 141
    PH-like; Pleckstrin homology-like domain

  3. XM_032544443.1 → XP_032400334.1  myotubularin isoform X3

    Conserved Domains (2) summary
    pfam06602
    Location:157 → 476
    Myotub-related; Myotubularin-like phosphatase domain
    cl17171
    Location:42 → 139
    PH-like; Pleckstrin homology-like domain

  4. XM_032544444.1 → XP_032400335.1  myotubularin isoform X4

    Conserved Domains (2) summary
    pfam06602
    Location:157 → 476
    Myotub-related; Myotubularin-like phosphatase domain
    cl17171
    Location:42 → 139
    PH-like; Pleckstrin homology-like domain

  5. XM_032544445.1 → XP_032400336.1  myotubularin isoform X5

    Conserved Domains (2) summary
    pfam06602
    Location:133 → 452
    Myotub-related; Myotubularin-like phosphatase domain
    cl17171
    Location:16 → 115
    PH-like; Pleckstrin homology-like domain

RNA

  1. XR_004336416.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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