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LOC116698924 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116698924, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116698924
Gene description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like
Locus tag
FQN60_016322
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
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Genomic context

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See LOC116698924 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 12 NC_045744.1 (17862501..17872796)

Chromosome 12 - NC_045744.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 13a Neighboring gene oxidative stress responsive kinase 1a Neighboring gene CTD small phosphatase-like protein Neighboring gene hedgehog acyltransferase like, a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045744.1 Chromosome 12 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045744.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    17862501..17872796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032531170.1 → XP_032387061.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X1

    UniProtKB/TrEMBL
    A0A5J5D3J4
    Conserved Domains (4) summary
    cd08593
    Location:311 → 608
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02222
    Location:230 → 764
    PLN02222; phosphoinositide phospholipase C 2
    cd13363
    Location:41 → 156
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    cl28895
    Location:161 → 294
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes

  2. XM_032531172.1 → XP_032387063.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X3

    UniProtKB/TrEMBL
    A0A5J5D3J4
    Conserved Domains (4) summary
    cd08593
    Location:292 → 589
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02222
    Location:211 → 745
    PLN02222; phosphoinositide phospholipase C 2
    cd13363
    Location:22 → 137
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    cl28895
    Location:142 → 275
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes

  3. XM_032531171.1 → XP_032387062.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X2

    UniProtKB/TrEMBL
    A0A5J5D3J4
    Conserved Domains (4) summary
    cd00275
    Location:639 → 765
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:311 → 607
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    cd13363
    Location:41 → 156
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    cl28895
    Location:161 → 299
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes

  4. XM_032531175.1 → XP_032387066.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X4

    UniProtKB/TrEMBL
    A0A5J5D3J4
    Conserved Domains (4) summary
    cd00275
    Location:620 → 746
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:292 → 588
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    cd13363
    Location:22 → 137
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    cl28895
    Location:142 → 280
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
Nucleotide Protein
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