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tor1aip2 torsin 1A interacting protein 2 [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116695798, updated on 14-Dec-2023

Summary

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Gene symbol
tor1aip2
Gene description
torsin 1A interacting protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
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Genomic context

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See tor1aip2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 9 NC_045741.1 (35097627..35104924, complement)

Chromosome 9 - NC_045741.1Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 Neighboring gene olfactomedin-like 2Ba Neighboring gene uncharacterized LOC116695799 Neighboring gene uncharacterized LOC116695390

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045741.1 Chromosome 9 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045741.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    35097627..35104924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032526262.1 → XP_032382153.1  torsin-1A-interacting protein 2 isoform X2

    Conserved Domains (1) summary
    pfam05609
    Location:158 → 558
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_032526260.1 → XP_032382151.1  torsin-1A-interacting protein 2 isoform X1

    Conserved Domains (1) summary
    pfam05609
    Location:94 → 559
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_032526263.1 → XP_032382154.1  torsin-1A-interacting protein 2 isoform X3

    Conserved Domains (1) summary
    pfam05609
    Location:56 → 456
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_032526261.1 → XP_032382152.1  torsin-1A-interacting protein 2 isoform X1

    Conserved Domains (1) summary
    pfam05609
    Location:94 → 559
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
Heading Accession and Version

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