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washc4 WASH complex subunit 4 [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116694059, updated on 18-Mar-2024

Summary

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Gene symbol
washc4
Gene description
WASH complex subunit 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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See washc4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
33
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 8 NC_045740.1 (36164873..36179005, complement)

Chromosome 8 - NC_045740.1Genomic Context describing neighboring genes Neighboring gene protein mono-ADP-ribosyltransferase PARP12-like Neighboring gene leucine rich repeat containing 10 Neighboring gene CCR4-NOT transcription complex, subunit 2 Neighboring gene solute carrier family 41 member 2-like Neighboring gene solute carrier family 41 member 2-like Neighboring gene uncharacterized LOC116694311

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045740.1 Chromosome 8 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045740.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    36164873..36179005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032523489.1 → XP_032379380.1  WASH complex subunit 4 isoform X2

    Conserved Domains (3) summary
    pfam14744
    Location:604 → 948
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:33 → 597
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:965 → 1134
    WASH-7_C; WASH complex subunit 7, C-terminal

  2. XM_032523488.1 → XP_032379379.1  WASH complex subunit 4 isoform X1

    Conserved Domains (3) summary
    pfam14744
    Location:604 → 948
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:33 → 597
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:965 → 1134
    WASH-7_C; WASH complex subunit 7, C-terminal
Nucleotide Protein
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