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hcfc1a host cell factor C1a [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116688555, updated on 18-Mar-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
Locus tag
FQN60_009602
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: 4
Exon count:
31
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 4 NC_045736.1 (27216630..27230025, complement)

Chromosome 4 - NC_045736.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC116688563 Neighboring gene red-sensitive opsin Neighboring gene G protein nucleolar 3 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045736.1 Chromosome 4 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045736.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    27216630..27230025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032514671.1 → XP_032370562.1  host cell factor 1-like isoform X5

    Conserved Domains (7) summary
    PLN02153
    Location:12 → 334
    PLN02153; epithiospecifier protein
    PRK14951
    Location:405 → 534
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    NF033609
    Location:1041 → 1263
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl21522
    Location:1580 → 1682
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl41773
    Location:608 → 953
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_032514666.1 → XP_032370557.1  host cell factor 1-like isoform X1

    Conserved Domains (7) summary
    PLN02153
    Location:12 → 334
    PLN02153; epithiospecifier protein
    PHA03247
    Location:404 → 697
    PHA03247; large tegument protein UL36; Provisional
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    NF033609
    Location:1082 → 1304
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl21522
    Location:1621 → 1723
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl41773
    Location:649 → 994
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_032514667.1 → XP_032370558.1  host cell factor 1-like isoform X1

    Conserved Domains (7) summary
    PLN02153
    Location:12 → 334
    PLN02153; epithiospecifier protein
    PHA03247
    Location:404 → 697
    PHA03247; large tegument protein UL36; Provisional
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    NF033609
    Location:1082 → 1304
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl21522
    Location:1621 → 1723
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl41773
    Location:649 → 994
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_032514668.1 → XP_032370559.1  host cell factor 1-like isoform X2

    Conserved Domains (7) summary
    PLN02153
    Location:12 → 334
    PLN02153; epithiospecifier protein
    PHA03247
    Location:404 → 697
    PHA03247; large tegument protein UL36; Provisional
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    NF033609
    Location:1082 → 1304
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl21522
    Location:1621 → 1723
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl41773
    Location:649 → 994
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_032514670.1 → XP_032370561.1  host cell factor 1-like isoform X4

    Conserved Domains (7) summary
    PLN02153
    Location:12 → 334
    PLN02153; epithiospecifier protein
    PHA03247
    Location:404 → 697
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1546 → 1575
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    cl21522
    Location:1582 → 1684
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl41773
    Location:583 → 994
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_032514669.1 → XP_032370560.1  host cell factor 1-like isoform X3

    Conserved Domains (7) summary
    PLN02153
    Location:12 → 334
    PLN02153; epithiospecifier protein
    PHA03247
    Location:404 → 697
    PHA03247; large tegument protein UL36; Provisional
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
    NF033609
    Location:1082 → 1303
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl21522
    Location:1620 → 1722
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl41773
    Location:649 → 994
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
Nucleotide Protein
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