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pigb phosphatidylinositol glycan anchor biosynthesis, class B [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116688195, updated on 18-Mar-2024

Summary

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Gene symbol
pigb
Gene description
phosphatidylinositol glycan anchor biosynthesis, class B
Locus tag
FQN60_010889
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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See pigb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 1 NC_045733.1 (5565938..5571314)

Chromosome 1 - NC_045733.1Genomic Context describing neighboring genes Neighboring gene RAB27A, member RAS oncogene family Neighboring gene PIGB opposite strand 1 Neighboring gene cell cycle progression 1 Neighboring gene protogenin homolog a (Gallus gallus) Neighboring gene NEDD4 E3 ubiquitin protein ligase a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045733.1 Chromosome 1 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045733.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    5565938..5571314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032514042.1 → XP_032369933.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A5J5DR31
    Conserved Domains (1) summary
    cl21590
    Location:42 → 521
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_032514049.1 → XP_032369940.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A5J5DR31
    Conserved Domains (1) summary
    cl21590
    Location:42 → 521
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  3. XM_032514056.1 → XP_032369947.1  GPI mannosyltransferase 3

    UniProtKB/TrEMBL
    A0A5J5DR31
    Conserved Domains (1) summary
    cl21590
    Location:42 → 521
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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