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mgat5 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116673956, updated on 18-Mar-2024

Summary

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Gene symbol
mgat5
Gene description
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase
Locus tag
FQN60_006653
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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See mgat5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
18
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 24 NC_045756.1 (3976992..4047638, complement)

Chromosome 24 - NC_045756.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 163 Neighboring gene uncharacterized LOC116673971 Neighboring gene uncharacterized LOC116673968 Neighboring gene chloride intracellular channel 5a Neighboring gene XK-related protein 6-like Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045756.1 Chromosome 24 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045756.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    3976992..4047638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032506374.1 → XP_032362265.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

    UniProtKB/TrEMBL
    A0A5J5CHH4
    Conserved Domains (2) summary
    pfam15027
    Location:5 → 138
    DUF4525; Domain of unknown function (DUF4525)
    pfam15024
    Location:172 → 726
    Glyco_transf_18; Glycosyltransferase family 18

RNA

  1. XR_004327928.1 RNA Sequence

  2. XR_004327927.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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