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LOC116671514 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116671514, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116671514
Gene description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like
Locus tag
FQN60_002717
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
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Genomic context

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See LOC116671514 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
16
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 21 NC_045753.1 (4250182..4294034, complement)

Chromosome 21 - NC_045753.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116671535 Neighboring gene uncharacterized LOC116671556 Neighboring gene acyl-CoA binding domain containing 4 Neighboring gene uncharacterized LOC116671582

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045753.1 Chromosome 21 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045753.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    4250182..4294034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032502865.1 → XP_032358756.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like isoform X2

    Conserved Domains (4) summary
    cd08593
    Location:311 → 606
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02952
    Location:235 → 761
    PLN02952; phosphoinositide phospholipase C
    cl28895
    Location:162 → 299
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl17171
    Location:39 → 157
    PH-like; Pleckstrin homology-like domain

  2. XM_032502864.1 → XP_032358755.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like isoform X1

    Conserved Domains (4) summary
    cd08593
    Location:312 → 607
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02952
    Location:236 → 762
    PLN02952; phosphoinositide phospholipase C
    cl28895
    Location:163 → 300
    EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    cl17171
    Location:40 → 158
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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