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itpk1b inositol-tetrakisphosphate 1-kinase b [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116670676, updated on 18-Sep-2024

Summary

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Gene symbol
itpk1b
Gene description
inositol-tetrakisphosphate 1-kinase b
Locus tag
FQN60_008951
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Also known as
itpk1
Orthologs
zebrafish all
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Genomic context

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See itpk1b in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 20 NC_045752.1 (9874815..9908756, complement)

Chromosome 20 - NC_045752.1Genomic Context describing neighboring genes Neighboring gene heat shock protein 4 like Neighboring gene polo-like kinase 4 (Drosophila) Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 Neighboring gene BTB (POZ) domain containing 7 Neighboring gene unc-79 homolog, NALCN channel complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045752.1 Chromosome 20 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4-trisphosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,3,4-trisphosphate 6-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-3,4,5,6-tetrakisphosphate 1-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol trisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol-tetrakisphosphate 1-kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045752.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    9874815..9908756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032501303.1 → XP_032357194.1  inositol-tetrakisphosphate 1-kinase isoform X1

    UniProtKB/TrEMBL
    A0A5J5CR78
    Conserved Domains (2) summary
    pfam17927
    Location:9 → 100
    Ins134_P3_kin_N; Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
    cl17255
    Location:120 → 316
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  2. XM_032501302.1 → XP_032357193.1  inositol-tetrakisphosphate 1-kinase isoform X1

    UniProtKB/TrEMBL
    A0A5J5CR78
    Conserved Domains (2) summary
    pfam17927
    Location:9 → 100
    Ins134_P3_kin_N; Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
    cl17255
    Location:120 → 316
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  3. XM_032501305.1 → XP_032357196.1  inositol-tetrakisphosphate 1-kinase isoform X3

    Conserved Domains (2) summary
    pfam17927
    Location:9 → 100
    Ins134_P3_kin_N; Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
    cl17255
    Location:120 → 403
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  4. XM_032501304.1 → XP_032357195.1  inositol-tetrakisphosphate 1-kinase isoform X2

    Conserved Domains (2) summary
    pfam17927
    Location:9 → 100
    Ins134_P3_kin_N; Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
    cl17255
    Location:120 → 245
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain
Nucleotide Protein
Heading Accession and Version

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