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HIF3A hypoxia inducible factor 3 subunit alpha [ Mustela erminea (ermine) ]

Gene ID: 116578919, updated on 18-Mar-2024

Summary

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Gene symbol
HIF3A
Gene description
hypoxia inducible factor 3 subunit alpha
See related
EnsemblRapid:ENSMERG00000020345
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela erminea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See HIF3A in Genome Data Viewer
Location:
chromosome: 19
Exon count:
16
Annotation release Status Assembly Chr Location
100 current mMusErm1.Pri (GCF_009829155.1) 19 NC_045632.1 (2927147..2954934)

Chromosome 19 - NC_045632.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116579973 Neighboring gene insulin growth factor-like family member 2 Neighboring gene uncharacterized LOC116578921 Neighboring gene protein phosphatase 5 catalytic subunit Neighboring gene paraneoplastic antigen-like protein 8A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045632.1 Chromosome 19 Reference mMusErm1.Pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypoxia-inducible factor 3-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela erminea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMusErm1.Pri Primary Assembly

Genomic

  1. NC_045632.1 Reference mMusErm1.Pri Primary Assembly

    Range
    2927147..2954934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032323544.1 → XP_032179435.1  hypoxia-inducible factor 3-alpha isoform X1

    Related
    ENSMERP00000033591.1, ENSMERT00000037515.1
    Conserved Domains (5) summary
    PHA03247
    Location:424 → 592
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:251 → 338
    PAS_3; PAS fold
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:480 → 509
    HIF-1; Hypoxia-inducible factor-1

  2. XM_032323545.1 → XP_032179436.1  hypoxia-inducible factor 3-alpha isoform X2

    Conserved Domains (5) summary
    PHA03247
    Location:408 → 576
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:235 → 322
    PAS_3; PAS fold
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:464 → 493
    HIF-1; Hypoxia-inducible factor-1

  3. XM_032323550.1 → XP_032179441.1  hypoxia-inducible factor 3-alpha isoform X5

    Conserved Domains (3) summary
    cd00130
    Location:54 → 101
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:182 → 269
    PAS_3; PAS fold
    pfam11413
    Location:411 → 440
    HIF-1; Hypoxia-inducible factor-1

  4. XM_032323546.1 → XP_032179437.1  hypoxia-inducible factor 3-alpha isoform X3

    Conserved Domains (5) summary
    PHA03247
    Location:424 → 632
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:251 → 338
    PAS_3; PAS fold
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins
    pfam11413
    Location:480 → 509
    HIF-1; Hypoxia-inducible factor-1

  5. XM_032323552.1 → XP_032179443.1  hypoxia-inducible factor 3-alpha isoform X6

    Conserved Domains (4) summary
    pfam06390
    Location:425 → 540
    NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
    cd00130
    Location:95 → 170
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:251 → 338
    PAS_3; PAS fold
    cd19729
    Location:12 → 74
    bHLH-PAS_HIF3a_PASD7; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor 3-alpha (HIF3a) and similar proteins

  6. XM_032323548.1 → XP_032179439.1  hypoxia-inducible factor 3-alpha isoform X4

    Conserved Domains (3) summary
    cd00130
    Location:69 → 116
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:197 → 284
    PAS_3; PAS fold
    pfam11413
    Location:426 → 455
    HIF-1; Hypoxia-inducible factor-1

  7. XM_032323547.1 → XP_032179438.1  hypoxia-inducible factor 3-alpha isoform X4

    Conserved Domains (3) summary
    cd00130
    Location:69 → 116
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:197 → 284
    PAS_3; PAS fold
    pfam11413
    Location:426 → 455
    HIF-1; Hypoxia-inducible factor-1

  8. XM_032323549.1 → XP_032179440.1  hypoxia-inducible factor 3-alpha isoform X5

    Related
    ENSMERP00000033643.1, ENSMERT00000037573.1
    Conserved Domains (3) summary
    cd00130
    Location:54 → 101
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:182 → 269
    PAS_3; PAS fold
    pfam11413
    Location:411 → 440
    HIF-1; Hypoxia-inducible factor-1
Nucleotide Protein
Heading Accession and Version

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