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PARVB parvin beta [ Aythya fuligula (tufted duck) ]

Gene ID: 116502039, updated on 25-Jun-2024

Summary

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Gene symbol
PARVB
Gene description
parvin beta
See related
EnsemblRapid:ENSAFUG00000017568
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See PARVB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 1 NC_045559.1 (73709576..73795981, complement)

Chromosome 1 - NC_045559.1Genomic Context describing neighboring genes Neighboring gene shisa like 1 Neighboring gene parvin gamma Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase Pnpla3-like Neighboring gene SAMM50 sorting and assembly machinery component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045559.1 Chromosome 1 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-parvin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045559.1 Reference bAytFul2.pri Primary Assembly

    Range
    73709576..73795981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032207749.1 → XP_032063640.1  beta-parvin isoform X1

    UniProtKB/TrEMBL
    A0A6J3EP20
    Related
    ENSAFUP00000023647.1, ENSAFUT00000029749.1
    Conserved Domains (2) summary
    cd21336
    Location:89 → 194
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cl00030
    Location:236 → 365
    CH_SF; calponin homology (CH) domain superfamily

  2. XM_032207750.1 → XP_032063641.1  beta-parvin isoform X2

    UniProtKB/TrEMBL
    A0A6J3EIT4
    Conserved Domains (2) summary
    cd21336
    Location:66 → 171
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cl00030
    Location:213 → 342
    CH_SF; calponin homology (CH) domain superfamily

  3. XM_032207751.1 → XP_032063642.1  beta-parvin isoform X3

    UniProtKB/TrEMBL
    A0A6J3EP42
    Conserved Domains (2) summary
    cd21336
    Location:51 → 156
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cl00030
    Location:198 → 327
    CH_SF; calponin homology (CH) domain superfamily

  4. XM_032207752.1 → XP_032063643.1  beta-parvin isoform X4

    UniProtKB/TrEMBL
    A0A6J3EQI1
    Conserved Domains (2) summary
    cd21336
    Location:36 → 141
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cl00030
    Location:183 → 312
    CH_SF; calponin homology (CH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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