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ITGA6 integrin subunit alpha 6 [ Aythya fuligula (tufted duck) ]

Gene ID: 116490658, updated on 25-Jun-2024

Summary

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Gene symbol
ITGA6
Gene description
integrin subunit alpha 6
See related
EnsemblRapid:ENSAFUG00000012745
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See ITGA6 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 6 NC_045564.1 (18325928..18368969, complement)

Chromosome 6 - NC_045564.1Genomic Context describing neighboring genes Neighboring gene neurabin-1-like Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene distal-less homeobox 2 Neighboring gene distal-less homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045564.1 Chromosome 6 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045564.1 Reference bAytFul2.pri Primary Assembly

    Range
    18325928..18368969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032190047.1 → XP_032045938.1  integrin alpha-6 isoform X1

    UniProtKB/TrEMBL
    A0A6J3D8U7
    Related
    ENSAFUP00000016961.1, ENSAFUT00000021434.1
    Conserved Domains (2) summary
    smart00191
    Location:367 → 419
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:461 → 938
    Integrin_alpha2; Integrin alpha

  2. XM_032190048.1 → XP_032045939.1  integrin alpha-6 isoform X2

    UniProtKB/TrEMBL
    A0A6J3D657
    Related
    ENSAFUP00000016958.1, ENSAFUT00000021431.1
    Conserved Domains (3) summary
    smart00191
    Location:367 → 419
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00357
    Location:1037 → 1051
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:461 → 938
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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