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PARVA parvin alpha [ Aythya fuligula (tufted duck) ]

Gene ID: 116489351, updated on 25-Jun-2024

Summary

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Gene symbol
PARVA
Gene description
parvin alpha
See related
EnsemblRapid:ENSAFUG00000001002
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See PARVA in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 5 NC_045563.1 (64346101..64412425)

Chromosome 5 - NC_045563.1Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2 Neighboring gene MICAL C-terminal like Neighboring gene TEA domain transcription factor 1 Neighboring gene Ras association domain family member 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045563.1 Chromosome 5 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-parvin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045563.1 Reference bAytFul2.pri Primary Assembly

    Range
    64346101..64412425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032187631.1 → XP_032043522.1  alpha-parvin isoform X1

    UniProtKB/TrEMBL
    A0A6J3D2S6
    Related
    ENSAFUP00000001453.1, ENSAFUT00000001590.1
    Conserved Domains (2) summary
    cd21335
    Location:91 → 205
    CH_PARVA_rpt1; first calponin homology (CH) domain found in alpha-parvin
    cd21337
    Location:244 → 372
    CH_PARVA_rpt2; second calponin homology (CH) domain found in alpha-parvin

  2. XM_032187632.1 → XP_032043523.1  alpha-parvin isoform X2

    UniProtKB/TrEMBL
    A0A6J3D1N6
    Related
    ENSAFUP00000001451.1, ENSAFUT00000001588.1
    Conserved Domains (2) summary
    cd21335
    Location:91 → 205
    CH_PARVA_rpt1; first calponin homology (CH) domain found in alpha-parvin
    cl00030
    Location:244 → 338
    CH_SF; calponin homology (CH) domain superfamily

  3. XM_032187634.1 → XP_032043525.1  alpha-parvin isoform X4

    UniProtKB/TrEMBL
    A0A6J3CZ39
    Conserved Domains (2) summary
    cd21335
    Location:18 → 132
    CH_PARVA_rpt1; first calponin homology (CH) domain found in alpha-parvin
    cd21337
    Location:171 → 299
    CH_PARVA_rpt2; second calponin homology (CH) domain found in alpha-parvin

  4. XM_032187633.1 → XP_032043524.1  alpha-parvin isoform X3

    UniProtKB/TrEMBL
    A0A6J3CZE2
    Conserved Domains (2) summary
    cd21335
    Location:56 → 170
    CH_PARVA_rpt1; first calponin homology (CH) domain found in alpha-parvin
    cd21337
    Location:209 → 337
    CH_PARVA_rpt2; second calponin homology (CH) domain found in alpha-parvin
Nucleotide Protein
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