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IBSP integrin binding sialoprotein [ Aythya fuligula (tufted duck) ]

Gene ID: 116489078, updated on 18-Mar-2024

Summary

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Gene symbol
IBSP
Gene description
integrin binding sialoprotein
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See IBSP in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 4 NC_045562.1 (45610700..45612179)

Chromosome 4 - NC_045562.1Genomic Context describing neighboring genes Neighboring gene SPARC like 1 Neighboring gene dentin matrix acidic phosphoprotein 1 Neighboring gene secreted phosphoprotein 1 Neighboring gene polycystin 2, transient receptor potential cation channel

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045562.1 Chromosome 4 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in bone mineralization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ossification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bone sialoprotein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045562.1 Reference bAytFul2.pri Primary Assembly

    Range
    45610700..45612179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032187156.1 → XP_032043047.1  bone sialoprotein 2

    UniProtKB/TrEMBL
    A0A6J3D1H0
    Conserved Domains (1) summary
    pfam05432
    Location:17 → 272
    BSP_II; Bone sialoprotein II (BSP-II)
Nucleotide Protein
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