U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYNJ2 synaptojanin 2 [ Aythya fuligula (tufted duck) ]

Gene ID: 116487237, updated on 25-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
SYNJ2
Gene description
synaptojanin 2
See related
EnsemblRapid:ENSAFUG00000011175
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SYNJ2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 3 NC_045561.1 (54955665..55018304)

Chromosome 3 - NC_045561.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_045561.1 Chromosome 3 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045561.1 Reference bAytFul2.pri Primary Assembly

    Range
    54955665..55018304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032183936.1 → XP_032039827.1  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6J3CSD2
    Related
    ENSAFUP00000015078.1, ENSAFUT00000018743.1
    Conserved Domains (4) summary
    cd09099
    Location:528 → 863
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1186 → 1486
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:25 → 487
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1007
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_032183937.1 → XP_032039828.1  synaptojanin-2 isoform X2

    UniProtKB/TrEMBL
    A0A6J3CRC3
    Conserved Domains (4) summary
    cd09099
    Location:403 → 738
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1061 → 1361
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:2 → 362
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:737 → 882
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_032183938.1 → XP_032039829.1  synaptojanin-2 isoform X3

    UniProtKB/TrEMBL
    A0A6J3CP38
    Conserved Domains (4) summary
    cd09099
    Location:270 → 605
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:928 → 1228
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:25 → 229
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:604 → 749
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.