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CAPN3 calpain 3 [ Hylobates moloch (silvery gibbon) ]

Gene ID: 116482515, updated on 18-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
See related
EnsemblRapid:ENSHMOG00010021528
Gene type
protein coding
RefSeq status
MODEL
Organism
Hylobates moloch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Hylobates
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_07 current HMol_V3 (GCF_009828535.3) Unplaced Scaffold NW_026652289.1 (71802675..71866904, complement)
100 previous assembly HMol (GCF_009828535.1) Unplaced Scaffold NW_022454858.1 (71798304..71866896, complement)

NW_026652289.1Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 23 Neighboring gene zinc finger protein 106 Neighboring gene U6 spliceosomal RNA Neighboring gene glucosidase alpha, neutral C Neighboring gene BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like Neighboring gene transmembrane protein 87A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009828535.3-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HMol_V3

Genomic

  1. NW_026652289.1 Reference HMol_V3

    Range
    71802675..71866904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032176033.2 → XP_032031924.1  calpain-3 isoform X2

    Related
    ENSHMOP00010026571.1, ENSHMOT00010033503.1
    Conserved Domains (4) summary
    cd16190
    Location:650 → 815
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:75 → 415
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:436 → 574
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:583 → 631
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_058427781.1 → XP_058283764.1  calpain-3 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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