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LOC116411646 oocyte zinc finger protein XlCOF28-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 116411646, updated on 4-Nov-2024

Summary

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Official Symbol
LOC116411646provided by Xenbase
Official Full Name
oocyte zinc finger protein XlCOF28-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29097439
See related
Ensembl:ENSXETG00000047622 AllianceGenome:Xenbase:XB-GENE-29097439
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable metal ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC116411646 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (6478588..6486671)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene splicing regulatory glutamine/lysine-rich protein 1 Neighboring gene zinc finger protein 268 Neighboring gene uncharacterized LOC100494837 Neighboring gene E3 ubiquitin-protein ligase Midline-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030682.2 Chromosome 6 Reference UCB_Xtro_10.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF28-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    6478588..6486671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904359.1 → XP_031760219.1  oocyte zinc finger protein XlCOF28-like

    UniProtKB/TrEMBL
    A0A803JPG8
    Related
    ENSXETP00000109856.1, ENSXETT00000121881.1
    Conserved Domains (3) summary
    COG5048
    Location:300 → 649
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:10 → 51
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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