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LOC116407556 oocyte zinc finger protein XlCOF22-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 116407556, updated on 4-Nov-2024

Summary

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Official Symbol
LOC116407556provided by Xenbase
Official Full Name
oocyte zinc finger protein XlCOF22-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29092695
See related
AllianceGenome:Xenbase:XB-GENE-29092695
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC116407556 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (3268752..3272970)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene H2A clustered histone 14 Neighboring gene uncharacterized LOC108644774 Neighboring gene uncharacterized LOC101735263 Neighboring gene oocyte zinc finger protein XlCOF7.1 Neighboring gene zinc finger protein 717

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030685.2 Chromosome 9 Reference UCB_Xtro_10.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF22-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    3268752..3272970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031893016.1 → XP_031748876.1  oocyte zinc finger protein XlCOF22-like

    UniProtKB/TrEMBL
    A0A8J1IWJ3
    Conserved Domains (4) summary
    cd07765
    Location:77 → 110
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:279 → 622
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:512 → 532
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:370 → 388
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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