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LOC116360623 U6 snRNA-associated Sm-like protein LSm8 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 116360623, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116360623
Gene description
U6 snRNA-associated Sm-like protein LSm8
See related
Ensembl:ENSOKIG00005049568
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC116360623 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022261985.1 (5150928..5155376, complement)

NW_022261985.1Genomic Context describing neighboring genes Neighboring gene thymidine phosphorylase Neighboring gene thymidine phosphorylase-like Neighboring gene RAD50-interacting protein 1 Neighboring gene tetraspanin-8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022261985 Unplaced Scaffold Reference Okis_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022261985.1 Reference Okis_V2 Primary Assembly

    Range
    5150928..5155376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031815631.1 → XP_031671491.1  U6 snRNA-associated Sm-like protein LSm8

    UniProtKB/TrEMBL
    A0A8C7IHP9, A0A8C7L500
    Related
    ENSOKIP00005114010.1, ENSOKIT00005122012.1
    Conserved Domains (1) summary
    cd01727
    Location:2 → 92
    LSm8; Like-Sm protein 8
Nucleotide Protein
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Molecular Biology Databases