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LOC116359032 exosome complex component CSL4-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 116359032, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116359032
Gene description
exosome complex component CSL4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC116359032 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022261978.1 (3759054..3765213)

NW_022261978.1Genomic Context describing neighboring genes Neighboring gene M-phase inducer phosphatase 1 Neighboring gene phosphoglycerate mutase 1 Neighboring gene lysine-rich nucleolar protein 1-like Neighboring gene exosome complex component CSL4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022261978 Unplaced Scaffold Reference Okis_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component CSL4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022261978.1 Reference Okis_V2 Primary Assembly

    Range
    3759054..3765213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031811694.1 → XP_031667554.1  exosome complex component CSL4-like isoform X2

    UniProtKB/TrEMBL
    A0A8C7I8V5
    Conserved Domains (2) summary
    cd05791
    Location:61 → 153
    S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
    pfam14382
    Location:6 → 40
    ECR1_N; Exosome complex exonuclease RRP4 N-terminal region

  2. XM_031811692.1 → XP_031667552.1  exosome complex component CSL4-like isoform X1

    Conserved Domains (2) summary
    cd05791
    Location:61 → 153
    S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
    pfam14382
    Location:6 → 40
    ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
Nucleotide Protein
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