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LOC116352981 exosome complex exonuclease RRP44-like [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 116352981, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116352981
Gene description
exosome complex exonuclease RRP44-like
See related
Ensembl:ENSOKIG00005046013
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC116352981 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Okis_V2 (GCF_002021735.2) Unplaced Scaffold NW_022261982.1 (6202932..6215170, complement)

NW_022261982.1Genomic Context describing neighboring genes Neighboring gene BORA aurora kinase A activator Neighboring gene exosome complex exonuclease RRP44-like Neighboring gene protein aurora borealis-like Neighboring gene sciellin-like Neighboring gene transforming growth factor-beta receptor-associated protein 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022261982 Unplaced Scaffold Reference Okis_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: exosome complex exonuclease RRP44-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NW_022261982.1 Reference Okis_V2 Primary Assembly

    Range
    6202932..6215170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031813355.1 → XP_031669215.1  LOW QUALITY PROTEIN: exosome complex exonuclease RRP44-like

    UniProtKB/TrEMBL
    A0A8C7IIX1
    Related
    ENSOKIP00005105013.1, ENSOKIT00005112567.1
    Conserved Domains (2) summary
    COG0557
    Location:202 → 927
    VacB; Exoribonuclease R [Transcription]
    cd09862
    Location:9 → 194
    PIN_Rrp44-like; VapC-like PIN domain of yeast exosome subunit Rrp44 endoribonuclease and other eukaryotic homologs
Nucleotide Protein
Heading Accession and Version

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