U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC116341635 delta-sarcoglycan [ Contarinia nasturtii (swede midge) ]

Gene ID: 116341635, updated on 10-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC116341635
Gene description
delta-sarcoglycan
Gene type
protein coding
RefSeq status
MODEL
Organism
Contarinia nasturtii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Cecidomyiidae; Contarinia
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC116341635 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current AAFC_CNas_1.1 (GCF_009176525.2) Unplaced Scaffold NW_022198093.1 (1793366..1819439, complement)

NW_022198093.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116341698 Neighboring gene protein phosphatase 1 regulatory subunit 12A-like Neighboring gene uncharacterized LOC116341636 Neighboring gene luciferin 4-monooxygenase-like Neighboring gene uncharacterized LOC116341797

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022198093 Unplaced Scaffold Reference AAFC_CNas_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Contarinia nasturtii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AAFC_CNas_1.1

Genomic

  1. NW_022198093.1 Reference AAFC_CNas_1.1

    Range
    1793366..1819439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031768809.1 → XP_031624669.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:153 → 427
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_031768815.1 → XP_031624675.1  delta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:69 → 343
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_031768811.1 → XP_031624671.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:153 → 427
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_031768813.1 → XP_031624673.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:153 → 427
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_031768810.1 → XP_031624670.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:153 → 427
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_031768814.1 → XP_031624674.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:116 → 390
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases