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LOC116338952 carbohydrate sulfotransferase 11 [ Contarinia nasturtii (swede midge) ]

Gene ID: 116338952, updated on 10-May-2024

Summary

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Gene symbol
LOC116338952
Gene description
carbohydrate sulfotransferase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Contarinia nasturtii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Cecidomyiidae; Contarinia
Orthologs
fruit fly all
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Genomic context

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See LOC116338952 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current AAFC_CNas_1.1 (GCF_009176525.2) Unplaced Scaffold NW_022197826.1 (2709..3767, complement)

NW_022197826.1Genomic Context describing neighboring genes Neighboring gene general vesicular transport factor p115-like Neighboring gene N-acetylgalactosaminyltransferase 6-like Neighboring gene ATP-binding cassette sub-family F member 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022197826 Unplaced Scaffold Reference AAFC_CNas_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Contarinia nasturtii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AAFC_CNas_1.1

Genomic

  1. NW_022197826.1 Reference AAFC_CNas_1.1

    Range
    2709..3767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031764537.1 → XP_031620397.1  carbohydrate sulfotransferase 11

    Conserved Domains (1) summary
    pfam03567
    Location:106 → 341
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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