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plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [ Oreochromis aureus ]

Gene ID: 116334646, updated on 18-Jun-2024

Summary

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Gene symbol
plod3
Gene description
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
See related
Ensembl:ENSOABG00000024350
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See plod3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 3 NC_052944.1 (86534944..86562800)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022256511.1 (137194..156851)

Linkage Group 3 - NC_052944.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120437770 Neighboring gene C-type lectin domain family 10 member A-like Neighboring gene cytochrome b5 domain-containing protein 1 Neighboring gene putative protein TPRXL Neighboring gene nuclear factor 7, ovary-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052944.1 Reference ZZ_aureus Primary Assembly

    Range
    86534944..86562800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031758111.2 → XP_031613971.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    UniProtKB/TrEMBL
    A0A668VZ14, A0A668W493
    Related
    ENSOABP00000057492.1, ENSOABT00000058944.2
    Conserved Domains (1) summary
    smart00702
    Location:567 → 730
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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