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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Oreochromis aureus ]

Gene ID: 116328542, updated on 18-Jun-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSOABG00000037347
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 10 NC_052951.1 (31235627..31694267)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022253948.1 (3332987..3526707)

Linkage Group 10 - NC_052951.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC120442397 Neighboring gene uncharacterized LOC120442288 Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized LOC120442307 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052951.1 Reference ZZ_aureus Primary Assembly

    Range
    31235627..31694267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039618529.1 → XP_039474463.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A668VET5

  2. XM_039618530.1 → XP_039474464.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A668VET5
    Related
    ENSOABP00000073873.1, ENSOABT00000065618.1

  3. XM_031750357.2 → XP_031606217.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A668VA16, A0A668VET5
    Related
    ENSOABP00000048716.1, ENSOABT00000049969.2
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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