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ano5b anoctamin 5b [ Oreochromis aureus ]

Gene ID: 116327180, updated on 18-Jun-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
See related
Ensembl:ENSOABG00000015984
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 1 NC_052942.1 (19880674..19910884, complement)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022253368.1 (1668239..1698051)

Linkage Group 1 - NC_052942.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2b Neighboring gene solute carrier family 17 member 6b Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Neighboring gene eukaryotic translation initiation factor 3, subunit Jb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052942.1 Reference ZZ_aureus Primary Assembly

    Range
    19880674..19910884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031748692.2 → XP_031604552.1  anoctamin-5b isoform X2

    UniProtKB/TrEMBL
    A0A668U8S1, A0A668UBS6
    Related
    ENSOABP00000034709.2, ENSOABT00000035674.2
    Conserved Domains (2) summary
    pfam04547
    Location:271 → 858
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:54 → 268
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_031748691.2 → XP_031604551.1  anoctamin-5b isoform X1

    UniProtKB/TrEMBL
    A0A668U8S1
    Related
    ENSOABP00000035252.2, ENSOABT00000036223.2
    Conserved Domains (2) summary
    pfam04547
    Location:286 → 873
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:69 → 283
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases