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plecb plectin b [ Oreochromis aureus ]

Gene ID: 116326766, updated on 18-Jun-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
Ensembl:ENSOABG00000016940
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 11
Exon count:
40
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 11 NC_052952.1 (13182021..13300797, complement)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022253088.1 (1208800..1264923, complement)

Linkage Group 11 - NC_052952.1Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene hepcidin-like Neighboring gene hepcidin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052952.1 Reference ZZ_aureus Primary Assembly

    Range
    13182021..13300797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039619380.1 → XP_039475314.1  plectin isoform X4

    UniProtKB/TrEMBL
    A0A668UNC9
    Conserved Domains (7) summary
    PTZ00121
    Location:1795 → 2665
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4331 → 4368
    PLEC; Plectin repeat
    COG0419
    Location:1038 → 1604
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:63 → 285
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:644 → 833
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1330 → 2085
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:835 → 879
    SH3; Src Homology 3 domain superfamily

  2. XM_039619379.1 → XP_039475313.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A668UNC9
    Conserved Domains (7) summary
    PTZ00121
    Location:1799 → 2669
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4335 → 4372
    PLEC; Plectin repeat
    COG0419
    Location:1042 → 1608
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:63 → 289
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:648 → 837
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1334 → 2089
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:839 → 883
    SH3; Src Homology 3 domain superfamily

  3. XM_039619382.1 → XP_039475316.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0A668UVM1
    Related
    ENSOABP00000041450.2, ENSOABT00000042566.2
    Conserved Domains (7) summary
    PTZ00121
    Location:1766 → 2636
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4302 → 4339
    PLEC; Plectin repeat
    COG0419
    Location:1009 → 1575
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:35 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:615 → 804
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1301 → 2056
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:806 → 850
    SH3; Src Homology 3 domain superfamily

  4. XM_039619383.1 → XP_039475317.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0A668UVM1
    Conserved Domains (7) summary
    PTZ00121
    Location:1751 → 2621
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4287 → 4324
    PLEC; Plectin repeat
    COG0419
    Location:994 → 1560
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:20 → 241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:600 → 789
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1286 → 2041
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:791 → 835
    SH3; Src Homology 3 domain superfamily

  5. XM_039619384.1 → XP_039475318.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0A668UVM1
    Conserved Domains (7) summary
    PTZ00121
    Location:1744 → 2614
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4280 → 4317
    PLEC; Plectin repeat
    COG0419
    Location:987 → 1553
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:13 → 234
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:593 → 782
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1279 → 2034
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:784 → 828
    SH3; Src Homology 3 domain superfamily

  6. XM_031748185.2 → XP_031604045.2  plectin isoform X2

    UniProtKB/TrEMBL
    A0A668UTU6
    Conserved Domains (9) summary
    PTZ00121
    Location:2783 → 3653
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5319 → 5356
    PLEC; Plectin repeat
    COG0419
    Location:2026 → 2592
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1051 → 1273
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK14951
    Location:769 → 949
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd00176
    Location:1632 → 1821
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2318 → 3073
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1823 → 1867
    SH3; Src Homology 3 domain superfamily

  7. XM_039619378.1 → XP_039475312.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A668UTU6
    Conserved Domains (9) summary
    PTZ00121
    Location:2787 → 3657
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5323 → 5360
    PLEC; Plectin repeat
    COG0419
    Location:2030 → 2596
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1051 → 1277
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK14951
    Location:769 → 949
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd00176
    Location:1636 → 1825
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:2322 → 3077
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1827 → 1871
    SH3; Src Homology 3 domain superfamily

  8. XM_039619381.1 → XP_039475315.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0A668UTC0
    Conserved Domains (7) summary
    PTZ00121
    Location:1775 → 2645
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4311 → 4348
    PLEC; Plectin repeat
    COG0419
    Location:1018 → 1584
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:44 → 265
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:624 → 813
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1310 → 2065
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:815 → 859
    SH3; Src Homology 3 domain superfamily

  9. XM_031748186.2 → XP_031604046.2  plectin isoform X6

    UniProtKB/TrEMBL
    A0A668UTC0
    Conserved Domains (7) summary
    PTZ00121
    Location:1771 → 2641
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4307 → 4344
    PLEC; Plectin repeat
    COG0419
    Location:1014 → 1580
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:44 → 261
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:620 → 809
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1306 → 2061
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:811 → 855
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein Strain
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