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p3h2 prolyl 3-hydroxylase 2 [ Oreochromis aureus ]

Gene ID: 116324692, updated on 18-Jun-2024

Summary

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Gene symbol
p3h2
Gene description
prolyl 3-hydroxylase 2
See related
Ensembl:ENSOABG00000005744
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See p3h2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 23 NC_052963.1 (45734083..45778679, complement)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022245726.1 (397413..441362)

Linkage Group 23 - NC_052963.1Genomic Context describing neighboring genes Neighboring gene coproporphyrinogen oxidase Neighboring gene coiled-coil domain containing 181 Neighboring gene claudin-7-like Neighboring gene claudin-19-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052963.1 Reference ZZ_aureus Primary Assembly

    Range
    45734083..45778679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031745400.2 → XP_031601260.1  prolyl 3-hydroxylase 2

    UniProtKB/TrEMBL
    A0A668S499, A0A668S7V7
    Related
    ENSOABP00000011025.1, ENSOABT00000011399.2
    Conserved Domains (1) summary
    smart00702
    Location:445 → 643
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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