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LOC116321936 fibrous sheath CABYR-binding protein-like [ Oreochromis aureus ]

Gene ID: 116321936, updated on 18-Jun-2024

Summary

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Gene symbol
LOC116321936
Gene description
fibrous sheath CABYR-binding protein-like
See related
Ensembl:ENSOABG00000017307
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC116321936 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 18 NC_052959.1 (307641..346962, complement)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022251203.1 (289414..326955, complement)

Linkage Group 18 - NC_052959.1Genomic Context describing neighboring genes Neighboring gene 2-lysophosphatidate phosphatase PLPPR4-like Neighboring gene uncharacterized LOC120434512 Neighboring gene cyclic nucleotide-gated cation channel beta-1-like Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene tocopherol (alpha) transfer protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fibrous sheath CABYR-binding protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052959.1 Reference ZZ_aureus Primary Assembly

    Range
    307641..346962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039601911.1 → XP_039457845.1  fibrous sheath CABYR-binding protein-like isoform X3

    UniProtKB/TrEMBL
    A0A668UDA1
    Conserved Domains (1) summary
    pfam05279
    Location:25 → 173
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_039601913.1 → XP_039457847.1  fibrous sheath CABYR-binding protein-like isoform X5

    UniProtKB/TrEMBL
    A0A668UDQ6
    Conserved Domains (1) summary
    pfam05279
    Location:21 → 169
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_039601912.1 → XP_039457846.1  fibrous sheath CABYR-binding protein-like isoform X4

    UniProtKB/TrEMBL
    A0A668UDQ6
    Related
    ENSOABT00000038909.2
    Conserved Domains (1) summary
    pfam05279
    Location:38 → 171
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_031741880.2 → XP_031597740.1  fibrous sheath CABYR-binding protein-like isoform X1

    UniProtKB/TrEMBL
    A0A668UDQ6
    Conserved Domains (1) summary
    pfam05279
    Location:38 → 186
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_039601910.1 → XP_039457844.1  fibrous sheath CABYR-binding protein-like isoform X2

    UniProtKB/TrEMBL
    A0A668UDQ6, A0A668UHG7
    Conserved Domains (1) summary
    pfam05279
    Location:38 → 186
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein Strain
Heading Accession and Version

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