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kptn kaptin (actin binding protein) [ Oreochromis aureus ]

Gene ID: 116319251, updated on 18-Jun-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
Ensembl:ENSOABG00000004120
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 10 NC_052951.1 (4329920..4340653, complement)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022249983.1 (346460..357156, complement)

Linkage Group 10 - NC_052951.1Genomic Context describing neighboring genes Neighboring gene calpain, small subunit 1 a Neighboring gene NOVA alternative splicing regulator 1 Neighboring gene cone-rod homeobox Neighboring gene H3 histone, family 3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052951.1 Reference ZZ_aureus Primary Assembly

    Range
    4329920..4340653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031738522.2 → XP_031594382.1  KICSTOR complex protein kaptin isoform X2

    UniProtKB/TrEMBL
    A0A668S3X3

  2. XM_031738520.2 → XP_031594380.1  KICSTOR complex protein kaptin isoform X1

    UniProtKB/TrEMBL
    A0A668S3X3, A0A668S706
    Related
    ENSOABP00000007599.2, ENSOABT00000007874.2
Nucleotide Protein Strain
Heading Accession and Version

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