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LOC116317750 torsin-1A-interacting protein 2-like [ Oreochromis aureus ]

Gene ID: 116317750, updated on 18-Jun-2024

Summary

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Gene symbol
LOC116317750
Gene description
torsin-1A-interacting protein 2-like
See related
Ensembl:ENSOABG00000006314
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC116317750 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
9
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 23 NC_052963.1 (43514833..43526355)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022249358.1 (116543..126342)

Linkage Group 23 - NC_052963.1Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 Neighboring gene olfactomedin-like 2Ba Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene uncharacterized LOC120436147 Neighboring gene uncharacterized LOC120436386

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 1-like; torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052963.1 Reference ZZ_aureus Primary Assembly

    Range
    43514833..43526355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039606867.1 → XP_039462801.1  torsin-1A-interacting protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A668SD70
    Related
    ENSOABP00000012381.1, ENSOABT00000012791.2
    Conserved Domains (1) summary
    pfam05609
    Location:318 → 522
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_031736613.2 → XP_031592473.2  torsin-1A-interacting protein 1-like isoform X1

    Related
    ENSOABP00000072453.1, ENSOABT00000077020.1
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases