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c1galt1c1 C1GALT1-specific chaperone 1 [ Oreochromis aureus ]

Gene ID: 116317567, updated on 18-Jun-2024

Summary

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Gene symbol
c1galt1c1
Gene description
C1GALT1-specific chaperone 1
See related
Ensembl:ENSOABG00000025997
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See c1galt1c1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 2 NC_052943.1 (17683428..17686851)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022249298.1 (1160660..1163955, complement)

Linkage Group 2 - NC_052943.1Genomic Context describing neighboring genes Neighboring gene chloride intracellular channel 2 Neighboring gene urotensin-related peptide 1 Neighboring gene MCTS1 re-initiation and release factor Neighboring gene cullin 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052943.1 Reference ZZ_aureus Primary Assembly

    Range
    17683428..17686851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031736375.2 → XP_031592235.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A668VYD5
    Related
    ENSOABP00000074316.1, ENSOABT00000084403.1
    Conserved Domains (1) summary
    cl21608
    Location:135 → 231
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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