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kirrel1a kirre like nephrin family adhesion molecule 1a [ Oreochromis aureus ]

Gene ID: 116315510, updated on 18-Jun-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
Ensembl:ENSOABG00000016777
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis aureus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly LG Location
101 current ZZ_aureus (GCF_013358895.1) 3 NC_052944.1 (9779596..9811733, complement)
100 previous assembly ASM587006v1 (GCF_005870065.1) Unplaced Scaffold NW_022248272.1 (14834..45674)

Linkage Group 3 - NC_052944.1Genomic Context describing neighboring genes Neighboring gene high affinity immunoglobulin epsilon receptor subunit gamma-like Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene uncharacterized LOC120439441

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1a
Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis aureus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZZ_aureus Primary Assembly

Genomic

  1. NC_052944.1 Reference ZZ_aureus Primary Assembly

    Range
    9779596..9811733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031733834.2 → XP_031589694.1  kin of IRRE-like protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A668UCU8
    Related
    ENSOABP00000037702.2, ENSOABT00000038738.2
    Conserved Domains (3) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_031733833.2 → XP_031589693.1  kin of IRRE-like protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A668UD67
    Related
    ENSOABP00000037656.2, ENSOABT00000038689.2
    Conserved Domains (3) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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