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LOC116308595 alpha-sarcoglycan-like [ Actinia tenebrosa (Australian red waratah sea anemone) ]

Gene ID: 116308595, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116308595
Gene description
alpha-sarcoglycan-like
See related
EnsemblRapid:LOC116308595
Gene type
protein coding
RefSeq status
MODEL
Organism
Actinia tenebrosa
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC116308595 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM960242v1 (GCF_009602425.1) Unplaced Scaffold NW_022258182.1 (18822..26015, complement)

NW_022258182.1Genomic Context describing neighboring genes Neighboring gene poly(ADP-ribose) glycohydrolase-like Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit-like Neighboring gene 60S ribosomal protein L12-like Neighboring gene U1 small nuclear ribonucleoprotein A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022258182 Unplaced Scaffold Reference ASM960242v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Actinia tenebrosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM960242v1 Primary Assembly

Genomic

  1. NW_022258182.1 Reference ASM960242v1 Primary Assembly

    Range
    18822..26015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031719053.1 → XP_031574913.1  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A6P8JB19
    Related
    XP_031574913.1, XM_031719053.1
    Conserved Domains (1) summary
    pfam05510
    Location:20 → 278
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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