U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC116308585 uncharacterized LOC116308585 [ Actinia tenebrosa (Australian red waratah sea anemone) ]

Gene ID: 116308585, updated on 14-Dec-2023

Summary

Gene symbol
LOC116308585
Gene description
uncharacterized LOC116308585
See related
EnsemblRapid:LOC116308585
Gene type
protein coding
RefSeq status
MODEL
Organism
Actinia tenebrosa
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC116308585 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM960242v1 (GCF_009602425.1) Unplaced Scaffold NW_022258180.1 (17938..47972, complement)

NW_022258180.1Genomic Context describing neighboring genes Neighboring gene neuropeptide S receptor-like Neighboring gene somatostatin receptor type 5-like Neighboring gene perlwapin-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_022258180 Unplaced Scaffold Reference ASM960242v1 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein LOC116308585

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Actinia tenebrosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM960242v1 Primary Assembly

Genomic

  1. NW_022258180.1 Reference ASM960242v1 Primary Assembly

    Range
    17938..47972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031719047.1XP_031574907.1  uncharacterized protein LOC116308585

    UniProtKB/TrEMBL
    A0A6P8J5E7
    Related
    XP_031574907.1, XM_031719047.1
    Conserved Domains (4) summary
    smart00326
    Location:11011162
    SH3; Src homology 3 domains
    COG1196
    Location:335573
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00992
    Location:10061084
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR02169
    Location:166465
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type