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LOC116308585 uncharacterized LOC116308585 [ Actinia tenebrosa (Australian red waratah sea anemone) ]

Gene ID: 116308585, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116308585
Gene description
uncharacterized LOC116308585
See related
EnsemblRapid:LOC116308585
Gene type
protein coding
RefSeq status
MODEL
Organism
Actinia tenebrosa
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC116308585 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM960242v1 (GCF_009602425.1) Unplaced Scaffold NW_022258180.1 (17938..47972, complement)

NW_022258180.1Genomic Context describing neighboring genes Neighboring gene neuropeptide S receptor-like Neighboring gene somatostatin receptor type 5-like Neighboring gene perlwapin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022258180 Unplaced Scaffold Reference ASM960242v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC116308585

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Actinia tenebrosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM960242v1 Primary Assembly

Genomic

  1. NW_022258180.1 Reference ASM960242v1 Primary Assembly

    Range
    17938..47972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031719047.1 → XP_031574907.1  uncharacterized protein LOC116308585

    UniProtKB/TrEMBL
    A0A6P8J5E7
    Related
    XP_031574907.1, XM_031719047.1
    Conserved Domains (4) summary
    smart00326
    Location:1101 → 1162
    SH3; Src homology 3 domains
    COG1196
    Location:335 → 573
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00992
    Location:1006 → 1084
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR02169
    Location:166 → 465
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
Nucleotide Protein
Heading Accession and Version

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