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LOC116307172 aspartyl/asparaginyl beta-hydroxylase-like [ Actinia tenebrosa (Australian red waratah sea anemone) ]

Gene ID: 116307172, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116307172
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:LOC116307172
Gene type
protein coding
RefSeq status
MODEL
Organism
Actinia tenebrosa
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia
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Genomic context

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See LOC116307172 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM960242v1 (GCF_009602425.1) Unplaced Scaffold NW_022261822.1 (21674..29084)

NW_022261822.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 4-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene clavesin-2-like Neighboring gene exostosin-1-like Neighboring gene failed axon connections homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022261822 Unplaced Scaffold Reference ASM960242v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Actinia tenebrosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM960242v1 Primary Assembly

Genomic

  1. NW_022261822.1 Reference ASM960242v1 Primary Assembly

    Range
    21674..29084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031717322.1 → XP_031573182.1  aspartyl/asparaginyl beta-hydroxylase-like

    UniProtKB/TrEMBL
    A0A6P8J0Y9
    Related
    XP_031573182.1, XM_031717322.1
    Conserved Domains (3) summary
    COG0457
    Location:104 → 334
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:261 → 287
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:398 → 551
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases