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LOC116259928 F-box protein GID2-like [ Nymphaea colorata (pocket water lily) ]

Gene ID: 116259928, updated on 23-Nov-2023

Summary

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Gene symbol
LOC116259928
Gene description
F-box protein GID2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nymphaea colorata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Nymphaeales; Nymphaeaceae; Nymphaea
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Genomic context

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See LOC116259928 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM883128v2 (GCF_008831285.2) 9 NC_045146.1 (16600617..16601680, complement)
100 previous assembly ASM883128v1 (GCF_008831285.1) 9 NC_045146.1 (16600580..16601680, complement)

Chromosome 9 - NC_045146.1Genomic Context describing neighboring genes Neighboring gene triacylglycerol lipase 1 Neighboring gene ferredoxin, root R-B1-like Neighboring gene methylthioribose kinase Neighboring gene probable cinnamyl alcohol dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nymphaea colorata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM883128v2 Primary Assembly

Genomic

  1. NC_045146.1 Reference ASM883128v2 Primary Assembly

    Range
    16600617..16601680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031637936.2 → XP_031493796.1  F-box protein GID2-like

    UniProtKB/TrEMBL
    A0A5K1GXR6
    Conserved Domains (1) summary
    pfam12937
    Location:60 → 99
    F-box-like
Nucleotide Protein
Heading Accession and Version

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