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SDC1 syndecan 1 [ Phasianus colchicus (ring-necked pheasant) ]

Gene ID: 116240434, updated on 27-Jul-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
See related
Ensembl:ENSPCLG00000019699
Gene type
protein coding
RefSeq status
MODEL
Organism
Phasianus colchicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Phasianus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM414374v1 (GCF_004143745.1) Unplaced Scaffold NW_022209245.1 (41868909..41891254, complement)

NW_022209245.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116240401 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene uncharacterized LOC116240556 Neighboring gene pumilio RNA binding family member 2 Neighboring gene b(0,+)-type amino acid transporter 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022209245 Unplaced Scaffold Reference ASM414374v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phasianus colchicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM414374v1 Primary Assembly

Genomic

  1. NW_022209245.1 Reference ASM414374v1 Primary Assembly

    Range
    41868909..41891254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031610803.1 → XP_031466663.1  syndecan-1

    UniProtKB/TrEMBL
    A0A669R410
    Related
    ENSPCLP00000022451.1, ENSPCLT00000031060.1
    Conserved Domains (1) summary
    pfam01034
    Location:244 → 304
    Syndecan; Syndecan domain
Nucleotide Protein
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