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LOC116178580 polypeptide N-acetylgalactosaminyltransferase 13-like [ Photinus pyralis (common eastern firefly) ]

Gene ID: 116178580, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116178580
Gene description
polypeptide N-acetylgalactosaminyltransferase 13-like
Locus tag
PPYR_12772
Gene type
protein coding
RefSeq status
MODEL
Organism
Photinus pyralis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Elateroidea; Lampyridae; Lampyrinae; Photinus
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Genomic context

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See LOC116178580 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Ppyr1.3 (GCF_008802855.1) Unplaced Scaffold NW_022170819.1 (7350551..7356187, complement)

NW_022170819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116179389 Neighboring gene uncharacterized LOC116178346 Neighboring gene Early gene at 23 Neighboring gene ATP-dependent DNA/RNA helicase DHX36-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022170819 Unplaced Scaffold Reference Ppyr1.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of firefly nuptial gifts: a multi-omics approach sheds light on postcopulatory sexual selection. Al-Wathiqui N, et al. Sci Rep, 2016 Dec 22. PMID 28004739, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Photinus pyralis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ppyr1.3

Genomic

  1. NW_022170819.1 Reference Ppyr1.3

    Range
    7350551..7356187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031498123.1 → XP_031353983.1  polypeptide N-acetylgalactosaminyltransferase 13-like isoform X1

    Conserved Domains (2) summary
    cd02510
    Location:171 → 472
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:483 → 612
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_031498124.1 → XP_031353984.1  polypeptide N-acetylgalactosaminyltransferase 13-like isoform X2

    UniProtKB/TrEMBL
    A0A1Y1MNF4
    Conserved Domains (2) summary
    cd02510
    Location:153 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 594
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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