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LOC116136207 hydroxyproline O-galactosyltransferase GALT6-like [ Pistacia vera ]

Gene ID: 116136207, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116136207
Gene description
hydroxyproline O-galactosyltransferase GALT6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pistacia vera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Pistacia
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Genomic context

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See LOC116136207 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current PisVer_v2 (GCF_008641045.1) Unplaced Scaffold NW_022196124.1 (1021920..1026262, complement)

NW_022196124.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g05670, mitochondrial Neighboring gene wall-associated receptor kinase-like 15 Neighboring gene glycerol-3-phosphate acyltransferase RAM2-like Neighboring gene exocyst complex component EXO84A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196124 Unplaced Scaffold Reference PisVer_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pistacia vera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PisVer_v2 Primary Assembly

Genomic

  1. NW_022196124.1 Reference PisVer_v2 Primary Assembly

    Range
    1021920..1026262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031421914.1 → XP_031277774.1  hydroxyproline O-galactosyltransferase GALT6-like isoform X2

    Conserved Domains (1) summary
    PLN03133
    Location:137 → 628
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_031421913.1 → XP_031277773.1  hydroxyproline O-galactosyltransferase GALT6-like isoform X1

    Conserved Domains (1) summary
    PLN03133
    Location:137 → 670
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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